STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0831PFAM: ferredoxin; KEGG: bmb:BruAb1_1031 ferredoxin, 2Fe-2S. (106 aa)    
Predicted Functional Partners:
Noca_0832
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_0300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.933
Noca_0833
3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase.
  
  
 0.781
Noca_2162
PFAM: cytochrome P450; KEGG: rha:RHA1_ro04669 cytochrome P450 CYP123.
 
 0.769
Noca_0512
PFAM: cytochrome P450; KEGG: mmc:Mmcs_3241 cytochrome P450.
 
 0.761
Noca_3536
PFAM: cytochrome P450; KEGG: sco:SCO3636 putative cytochrome P-450 hydroxylase.
 
 0.754
Noca_2739
KEGG: rha:RHA1_ro04679 cytochrome P450 CYP125.
 
 0.752
Noca_3562
PFAM: cytochrome P450; KEGG: rha:RHA1_ro05210 cytochrome P450 CYP136.
 
 0.752
Noca_1871
PFAM: cytochrome P450; KEGG: eba:ebA6767 hypothetical heme-thiolate monooxygenase.
 
 0.743
Noca_4375
PFAM: cytochrome P450; KEGG: mtc:MT0342 P450 heme-thiolate protein.
  
 0.703
Noca_0835
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: nfa:nfa35210 putative muconate cycloisomerase.
  
  
 0.700
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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