Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0849PFAM: luciferase family protein; KEGG: rha:RHA1_ro05823 hypothetical protein. (293 aa)    
Predicted Functional Partners:
Noca_0856
KEGG: afu:AF1066 N5,N10-methylenetetrahydromethanopterin reductase.
 
     0.776
Noca_0850
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO7702 GntR-family transcriptional regulator.
       0.773
Noca_0813
PFAM: luciferase family protein; KEGG: sma:SAV6641 FMN-dependent monooxygenase.
  
     0.759
Noca_0848
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro00742 hypothetical protein.
  
    0.740
Noca_1630
Methylenetetrahydromethanopterin reductase; PFAM: luciferase family protein; KEGG: hma:pNG7255 F420-dependent N5,N10-methylene-tetrahydromethanopterin reductase.
  
     0.739
Noca_0846
PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_A3599 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.737
Noca_0847
PFAM: Cupin 2, conserved barrel domain protein; KEGG: hma:rrnAC3415 hypothetical protein.
       0.737
Noca_1409
TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: tfu:Tfu_2518 hypothetical protein.
 
   
 0.697
Noca_1410
LPPG:FO 2-phospho-L-lactate transferase; TIGRFAM: LPPG; PFAM: protein of unknown function UPF0052 and CofD; KEGG: sco:SCO3036 LPPG:FO 2-phopspho-L-lactate transferase.
 
   
 0.665
Noca_0863
FO synthase subunit 1; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: fra:Francci3_0745 conserved hypothetical protein.
 
  
 0.628
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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