STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0878PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: fal:FRAAL1971 conserved hypothetical protein; putative FMN-binding split barrel domain. (132 aa)    
Predicted Functional Partners:
Noca_4568
PFAM: CsbD family protein; KEGG: rha:RHA1_ro04155 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.709
Noca_0877
KEGG: fal:FRAAL6695 hypothetical protein.
       0.636
Noca_2302
PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: nfa:nfa16890 putative epimerase.
  
    0.617
Noca_0257
PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: sma:SAV7465 hypothetical protein.
  
   
 0.569
Noca_0879
PFAM: Clp N terminal domain protein.
       0.569
Noca_0880
PFAM: aldo/keto reductase; KEGG: tfu:Tfu_2293 oxidoreductase.
  
    0.502
Noca_0824
PFAM: protein of unknown function DUF1271; KEGG: mac:MA1680 hypothetical protein.
   
    0.485
Noca_0172
PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: rha:RHA1_ro02638 hypothetical protein.
  
   
 0.465
Noca_3627
Dehydrogenase; KEGG: sco:SCO6495 dehydrogenase.
  
     0.439
Noca_2313
PFAM: luciferase family protein; KEGG: rha:RHA1_ro04019 probable alkanesulfonate monooxygenase.
  
     0.434
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.