STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0886TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel. (827 aa)    
Predicted Functional Partners:
Noca_3972
PFAM: PKD domain containing protein; KEGG: sde:Sde_3982 protein of unknown function DUF37.
 
     0.529
Noca_0885
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV7030 transmembrane efflux protein.
       0.515
Noca_0718
KEGG: hne:HNE_2670 putative lipoprotein.
 
     0.492
Noca_1605
PFAM: protein of unknown function DUF214; KEGG: sco:SCO6365 putative integral membrane protein.
  
     0.457
Noca_0723
PFAM: glycoside hydrolase, family 5; KEGG: sma:SAV1854 endo-1,4-beta-glucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.410
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
       0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.