STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0892PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1742 putative ABC-transporter ATP-binding protein. (302 aa)    
Predicted Functional Partners:
Noca_0893
KEGG: rha:RHA1_ro06014 hypothetical protein.
 
     0.869
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
  
 0.769
rpsI
PFAM: ribosomal protein S9; KEGG: pac:PPA1802 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.758
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.672
Noca_4448
KEGG: sco:SCO3959 possible integral membrane protein.
  
 
 0.581
Noca_1483
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro04497 ABC transporter, permease component.
  
 0.566
Noca_1322
Hypothetical protein; KEGG: sco:SCO6361 integral membrane protein.
 
 
 0.513
Noca_1321
Hypothetical protein.
 
 
 0.512
Noca_4498
KEGG: fal:FRAAL6618 hypothetical protein.
 
 
 0.506
Noca_1022
Hypothetical protein; KEGG: mmc:Mmcs_0550 putative ABC transporter membrane protein.
 
 
 0.502
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.