Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0892PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1742 putative ABC-transporter ATP-binding protein. (302 aa)    
Predicted Functional Partners:
Noca_0893
KEGG: rha:RHA1_ro06014 hypothetical protein.
 
     0.869
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
    0.765
rpsI
PFAM: ribosomal protein S9; KEGG: pac:PPA1802 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
     
 0.763
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.669
Noca_1483
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro04497 ABC transporter, permease component.
 
  
 0.543
Noca_4448
KEGG: sco:SCO3959 possible integral membrane protein.
  
 
 0.537
Noca_1322
Hypothetical protein; KEGG: sco:SCO6361 integral membrane protein.
 
 
 0.504
Noca_1321
Hypothetical protein.
 
 
 0.503
Noca_1226
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_4445 ABC transporter related.
 
 0.501
Noca_4498
KEGG: fal:FRAAL6618 hypothetical protein.
 
 
 0.497
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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