STRINGSTRING
Noca_0893 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0893" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0893Hypothetical protein (266 aa)    
Predicted Functional Partners:
Noca_0892
ABC transporter-like protein (302 aa)
 
          0.956
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate (448 aa)
              0.845
rpsI
30S ribosomal protein S9 (166 aa)
              0.837
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (147 aa)
              0.716
Noca_2680
Plasmid stabilization system protein (98 aa)
   
          0.669
Noca_1520
Hypothetical protein (52 aa)
   
          0.619
Noca_2681
Prevent-host-death family protein; Antitoxin component of a toxin-antitoxin (TA) module (94 aa)
   
          0.612
Noca_3497
Glycosyl transferase family protein (496 aa)
   
          0.589
Noca_0894
Hypothetical protein (212 aa)
              0.547
Noca_4497
ABC transporter-like protein (314 aa)
 
          0.543
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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