Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_0898KEGG: fra:Francci3_0932 hypothetical protein. (308 aa)    
Predicted Functional Partners:
Noca_2675
PFAM: pentapeptide repeat protein.
  
     0.730
Noca_2867
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein.
  
     0.698
Noca_2174
PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_0351 helix-turn-helix, fis-type.
  
     0.632
Noca_1017
KEGG: mmc:Mmcs_1202 hypothetical protein.
  
     0.571
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
       0.531
Noca_0900
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.502
Noca_0901
PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV4968 hydrolase.
       0.502
Noca_3966
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4106 hypothetical protein.
  
     0.448
Noca_2866
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2674 ABC transporter ATP-binding protein.
  
     0.434
Noca_0820
Hypothetical protein; KEGG: sma:SAV403 putative pyridine nucleotide transhydrogenase, beta subunit.
  
     0.417
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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