Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0906KEGG: sma:SAV2206 hypothetical protein. (189 aa)    
Predicted Functional Partners:
Noca_1468
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO4430 secreted protein.
  
     0.742
Noca_1907
Hypothetical protein.
  
     0.718
Noca_1771
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO5386 anti-sigma factor antagonist.
  
     0.714
Noca_4019
PFAM: metallophosphoesterase; KEGG: swo:Swol_2226 hypothetical protein.
  
     0.696
Noca_0907
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: sma:SAV1697 putative DNA ligase.
       0.693
Noca_2575
KEGG: sma:SAV6479 hypothetical protein.
  
     0.683
Noca_0320
KEGG: sma:SAV4558 hypothetical protein.
  
     0.658
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
  
     0.652
Noca_1906
KEGG: rxy:Rxyl_2197 hypothetical protein.
  
     0.651
Noca_4674
PFAM: alanine racemase domain protein; KEGG: sco:SCO3903 hypothetical protein.
  
     0.614
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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