STRINGSTRING
Noca_0906 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0906" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0906Hypothetical protein (189 aa)    
Predicted Functional Partners:
Noca_0907
ATP-dependent DNA ligase (366 aa)
 
          0.803
Noca_4674
Alanine racemase domain-containing protein (351 aa)
   
          0.777
Noca_3958
Hypothetical protein (118 aa)
   
          0.776
Noca_1468
ErfK/YbiS/YcfS/YnhG family protein (234 aa)
   
          0.776
Noca_0320
Hypothetical protein (197 aa)
   
          0.767
Noca_4019
Metallophosphoesterase (480 aa)
   
          0.757
Noca_3929
Integral membrane protein (78 aa)
   
          0.751
Noca_4682
Hypothetical protein (735 aa)
   
          0.732
Noca_3586
Hypothetical protein (609 aa)
   
          0.723
Noca_4673
Methicillin resistance protein (383 aa)
   
          0.722
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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