Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
Noca_0922KEGG: tfu:Tfu_2594 similar to membrane-bound lytic murein transglycosylase B. (249 aa)    
Predicted Functional Partners:
pstB
Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
       0.718
Noca_0923
PFAM: Collagen triple helix repeat; KEGG: hso:HS_1632 conserved hypothetical protein.
       0.545
Noca_0920
KEGG: cya:CYA_1212 phosphate uptake transporter (PhoT) ABC transporter family, substrate-binding protein; TC 3.A.1.7.1.
       0.475
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
     
 0.442
Noca_0917
Phosphate ABC transporter substrate-binding protein, PhoT family; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; KEGG: fal:FRAAL6535 high-affinity phosphate transport protein (ABC superfamily); TC 3.A.1.7.1.
 
     0.438
Noca_0926
PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: sma:SAV3537 putative MazG-family transcriptional regulator.
       0.408
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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