STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0933KEGG: mmc:Mmcs_2235 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Noca_0932
PFAM: protein of unknown function DUF1469; KEGG: sco:SCO1911 integral membrane protein.
       0.818
Noca_0929
PFAM: Septum formation initiator; KEGG: pac:PPA0546 conserved protein, putative septum formation initiator.
     
 0.666
Noca_3470
TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sma:SAV5452 putative folylpolyglutamate synthase.
  
  
 0.625
Noca_0934
KEGG: sma:SAV5684 hypothetical protein.
       0.617
Noca_0930
PFAM: protein of unknown function DUF501; KEGG: sma:SAV3531 hypothetical protein.
       0.596
Noca_0931
PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3093 hydrolase.
       0.596
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
       0.566
Noca_0935
PFAM: Uracil-DNA glycosylase superfamily; KEGG: fal:FRAAL6229 uracil-DNA glycosylase.
       0.467
Noca_4502
PFAM: carboxyl transferase; Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02935 acetyl-CoA carboxylase carboxyl transferase subunit.
  
    0.402
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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