Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0935PFAM: Uracil-DNA glycosylase superfamily; KEGG: fal:FRAAL6229 uracil-DNA glycosylase. (284 aa)    
Predicted Functional Partners:
Noca_3623
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mmc:Mmcs_2993 phage SPO1 DNA polymerase-related protein.
  
  
  0.916
Noca_4646
PFAM: protein of unknown function DUF488; KEGG: nha:Nham_3631 protein of unknown function DUF488.
      0.668
Noca_0934
KEGG: sma:SAV5684 hypothetical protein.
       0.609
Noca_3663
PFAM: peptidase M22, glycoprotease; KEGG: sco:SCO4750 hypothetical protein.
  
    0.564
Noca_1247
Conserved carboxylase region; PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: sus:Acid_6961 conserved carboxylase region.
  
    0.548
Noca_0931
PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3093 hydrolase.
  
    0.510
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.508
Noca_0929
PFAM: Septum formation initiator; KEGG: pac:PPA0546 conserved protein, putative septum formation initiator.
       0.499
Noca_0930
PFAM: protein of unknown function DUF501; KEGG: sma:SAV3531 hypothetical protein.
       0.499
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
       0.484
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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