STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0944KEGG: sco:SCO3947 putative ABC transporter; TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase. (1081 aa)    
Predicted Functional Partners:
Noca_0943
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: sco:SCO3946 putative cytochrome oxidase subunit II.
 
  
 0.999
Noca_0942
PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: lxx:Lxx12300 cytochrome D ubiquinol oxidase subunit I.
 
  
 0.998
Noca_0945
PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: fra:Francci3_3253 two component transcriptional regulator, LuxR family.
  
  
 0.786
Noca_1346
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO6535 putative nitrate reductase alpha chain NarG; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  
 0.689
Noca_1922
Hypothetical protein.
 
     0.519
Noca_0189
KEGG: sco:SCO2686 LuxR-family transcriptional regulator.
  
   
 0.514
Noca_1673
Hypothetical protein; KEGG: mes:Meso_2289 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
   
 0.493
Noca_0246
KEGG: sco:SCO0502 hypothetical protein.
 
     0.479
Noca_2180
KEGG: sco:SCO0502 hypothetical protein.
 
     0.476
Noca_1516
ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: sco:SCO5188 putative ATP-dependent DNA helicase.
 
   
 0.467
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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