STRINGSTRING
Noca_0946 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0946" - GAF domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0946GAF domain-containing protein (536 aa)    
Predicted Functional Partners:
Noca_0992
Regulatory protein LuxR (218 aa)
 
  0.951
Noca_0945
Response regulator receiver (216 aa)
 
  0.946
Noca_1356
Regulatory protein LuxR (217 aa)
 
 
  0.881
Noca_0947
Pyridoxamine 5’-phosphate oxidase-like protein (154 aa)
 
          0.878
Noca_2635
Response regulator receiver (207 aa)
 
 
  0.865
Noca_3606
Regulatory protein LuxR (229 aa)
 
 
  0.863
Noca_1438
Response regulator receiver (213 aa)
 
 
  0.862
Noca_3120
Response regulator receiver (212 aa)
 
 
  0.857
Noca_3643
Two component LuxR family transcriptional regulator (215 aa)
 
 
  0.855
Noca_1020
Response regulator receiver (218 aa)
 
 
  0.851
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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