STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0948PFAM: UspA domain protein; KEGG: rha:RHA1_ro04893 universal stress protein. (290 aa)    
Predicted Functional Partners:
Noca_0949
PFAM: CBS domain containing protein; KEGG: pai:PAE3319 conserved protein with 2 CBS domains.
       0.774
Noca_0946
PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO0203 two-component sensor.
 
  
 0.636
Noca_0947
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sco:SCO0174 putative DNA-binding protein.
  
  
 0.615
Noca_0996
PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein.
 
     0.608
Noca_1000
PFAM: UspA domain protein; KEGG: mmc:Mmcs_0719 UspA.
  
     0.443
Noca_0988
PFAM: UspA domain protein; KEGG: tfu:Tfu_3032 hypothetical protein.
 
     0.435
Noca_0990
KEGG: nfa:nfa28960 hypothetical protein.
 
  
 0.417
hpf
Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.