STRINGSTRING
Noca_0948 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0948" - UspA domain-containing protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0948UspA domain-containing protein (290 aa)    
Predicted Functional Partners:
Noca_0949
Hypothetical protein (132 aa)
              0.859
Noca_0946
GAF domain-containing protein (536 aa)
 
   
  0.719
Noca_1000
UspA domain-containing protein (293 aa)
   
          0.683
Noca_0947
Pyridoxamine 5’-phosphate oxidase-like protein (154 aa)
 
          0.678
Noca_0988
UspA domain-containing protein (304 aa)
   
          0.613
groL2
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (541 aa)
   
 
  0.564
groL1
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (541 aa)
   
 
  0.564
Noca_2530
Glyceraldehyde-3-phosphate dehydrogenase (331 aa)
       
  0.528
Noca_0998
P-type HAD superfamily ATPase (844 aa)
   
   
  0.483
Noca_1994
Hypothetical protein (147 aa)
   
          0.462
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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