STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0953PFAM: von Willebrand factor, type A; KEGG: rha:RHA1_ro05590 hypothetical protein. (670 aa)    
Predicted Functional Partners:
Noca_0952
KEGG: rha:RHA1_ro05589 probable magnesium chelatase subunit ChlI.
 
    0.975
Noca_2627
KEGG: nfa:nfa29330 hypothetical protein.
 
     0.630
Noca_0951
PFAM: UspA domain protein; KEGG: cjk:jk0100 putative universal stress protein.
       0.495
Noca_2625
PFAM: Phosphoglycerate mutase; KEGG: mmc:Mmcs_3157 phosphoglycerate mutase.
 
     0.485
Noca_4619
KEGG: mpa:MAP3942 hypothetical protein.
  
     0.466
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.