Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_0954PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family. (831 aa)    
Predicted Functional Partners:
Noca_2607
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: rha:RHA1_ro05490 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.671
Noca_0955
Hypothetical protein.
       0.664
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
    0.465
Noca_3263
Beta-glucosidase; PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sma:SAV2708 putative glycosyl hydrolase.
 
   
 0.460
Noca_1314
PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; metalloenzyme domain protein; KEGG: bfr:BF3778 hypothetical protein.
   
  0.425
Noca_2945
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: tfu:Tfu_2126 hypothetical protein.
   
  0.425
Noca_3820
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pgi:PG0126 type I phosphodiesterase/nucleotide pyrophosphatase family protein.
   
  0.425
Noca_0059
PFAM: extracellular solute-binding protein, family 1; KEGG: oih:OB0774 sugar ABC transporter sugar-binding protein; TC 3.A.1.1.-.
 
  
 0.423
rpsG
SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.406
Noca_0041
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: mes:Meso_4520 extracellular solute-binding protein, family 1; TC 3.A.1.1.-.
 
  
 0.402
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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