STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0964PFAM: ABC-1 domain protein; KEGG: sma:SAV3068 ABC transporter ATP-binding protein. (445 aa)    
Predicted Functional Partners:
Noca_3112
PFAM: cyclase/dehydrase; KEGG: sco:SCO2129 hypothetical protein.
  
 
 
 0.764
Noca_4201
PFAM: helix-turn-helix domain protein; KEGG: fal:FRAAL0956 putative DNA-binding protein (partial match).
  
     0.729
Noca_0487
PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0978 putative acyltransferase.
 
     0.598
Noca_0329
Arsenite efflux ATP-binding protein ArsA; PFAM: Anion-transporting ATPase; KEGG: sco:SCO3577 ion-transporting ATPase; TC 3.A.4.1.1.
  
     0.590
Noca_0963
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV785 hypothetical protein.
       0.588
Noca_0965
PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO7388 dehydrogenase.
       0.566
Noca_0328
Arsenite efflux ATP-binding protein ArsA; PFAM: Anion-transporting ATPase; KEGG: tfu:Tfu_0111 putative ion-transporting ATPase; TC 3.A.4.1.1.
  
     0.509
Noca_0901
PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV4968 hydrolase.
  
  
 0.497
Noca_0486
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: fra:Francci3_0479 NAD-dependent epimerase/dehydratase.
 
  
 0.491
Noca_1218
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro06332 hypothetical protein; Belongs to the long-chain O-acyltransferase family.
  
  
 0.420
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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