Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0965PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO7388 dehydrogenase. (528 aa)    
Predicted Functional Partners:
Noca_3628
KEGG: mmc:Mmcs_3027 hypothetical protein.
 
  
 0.695
Noca_2889
Protoporphyrin IX magnesium-chelatase; KEGG: tfu:Tfu_0313 Mg-chelatase subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
  
 0.657
Noca_0964
PFAM: ABC-1 domain protein; KEGG: sma:SAV3068 ABC transporter ATP-binding protein.
       0.564
Noca_0963
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV785 hypothetical protein.
       0.427
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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