Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0968PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL1681 putative ABC transporter, ATP-binding protein. (254 aa)    
Predicted Functional Partners:
Noca_0969
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL1680 hypothetical protein; putative membrane protein; putative HPr serine phosphorylation domain.
 
 
 0.992
Noca_1719
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dra:DR2404 ABC transporter, ATP-binding protein, MsbA family.
 
   
 0.636
rpsE
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
 
   
 0.636
Noca_3776
PFAM: protein of unknown function DUF214; KEGG: dvu:DVUA0023 ABC transporter, permease protein, putative.
  
 
 0.623
Noca_3777
PFAM: protein of unknown function DUF214; KEGG: bpm:BURPS1710b_A1034 ABC transporter, permease protein.
  
 
 0.623
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.593
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
   
 0.585
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
 
     0.562
Noca_1718
PFAM: protein of unknown function DUF214; KEGG: tte:TTE2713 ABC-type transport systems, involved in lipoprotein release, permease components.
  
 
 0.557
Noca_1016
Cysteine--tRNA ligase; PFAM: cysteinyl-tRNA synthetase, class Ia; KEGG: tfu:Tfu_1832 cysteine--tRNA ligase.
 
     0.553
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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