STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0970PFAM: DGPFAETKE family protein; KEGG: rha:RHA1_ro00578 hypothetical protein. (118 aa)    
Predicted Functional Partners:
Noca_4614
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; KEGG: sma:SAV1195 putative RNA polymerase ECF-subfamily sigma factor.
 
   
 0.649
Noca_0971
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_CH02466 hypothetical protein.
       0.532
Noca_3869
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4452 RNA polymerase sigma factor.
 
   
 0.508
Noca_2117
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: mxa:MXAN_5731 RNA polymerase sigma-70 factor, ECF subfamily.
 
   
 0.506
Noca_1275
PFAM: bifunctional deaminase-reductase domain protein; KEGG: fal:FRAAL4597 putative DNA binding protein.
 
     0.416
Noca_0278
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lxx:Lxx15560 lyase.
  
     0.413
Noca_2675
PFAM: pentapeptide repeat protein.
 
     0.407
Noca_0213
KEGG: fal:FRAAL4811 putative superfamily I DNA and RNA helicases.
  
     0.401
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.