Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0992PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: fra:Francci3_3253 two component transcriptional regulator, LuxR family. (218 aa)    
Predicted Functional Partners:
Noca_0946
PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO0203 two-component sensor.
 
 0.985
Noca_0994
PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: tfu:Tfu_3046 GAF:ATP-binding region, ATPase-like.
 
 0.984
Noca_0945
PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: fra:Francci3_3253 two component transcriptional regulator, LuxR family.
  
  
 
0.901
Noca_2942
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold domain protein; KEGG: dge:Dgeo_0556 multi-sensor signal transduction histidine kinase.
 
 
 0.854
Noca_3119
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rxy:Rxyl_2612 GAF sensor signal transduction histidine kinase.
 
 
 0.854
Noca_2634
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro06091 sensor kinase, two-component system.
 
 
 0.853
Noca_1019
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV4680 two-component system sensor kinase.
 
 
 0.849
Noca_3642
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO1071 two component system sensor kinase.
 
 
 0.840
Noca_1670
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mag:amb3735 signal transduction histidine kinase.
  
 
 0.795
Noca_3664
PFAM: regulatory protein, LuxR; KEGG: sma:SAV6477 two-component system response regulator.
  
     0.740
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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