Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_0997PFAM: UspA domain protein; KEGG: rha:RHA1_ro02263 possible universal stress protein. (306 aa)    
Predicted Functional Partners:
Noca_0998
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ade:Adeh_0468 cation transporting P-type ATPase.
  
  
 0.816
Noca_1997
PFAM: UspA domain protein; KEGG: mmc:Mmcs_1097 UspA.
  
     0.750
Noca_0951
PFAM: UspA domain protein; KEGG: cjk:jk0100 putative universal stress protein.
  
     0.575
Noca_0996
PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein.
 
    
0.539
Noca_0995
KEGG: fra:Francci3_1002 hypothetical protein.
 
    0.502
Noca_0284
KEGG: fra:Francci3_4502 putative signal-transduction protein with CBS domains.
 
  
 0.493
Noca_0285
KEGG: sco:SCO0174 putative DNA-binding protein.
 
  
 0.488
Noca_0947
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sco:SCO0174 putative DNA-binding protein.
 
  
 0.487
Noca_0993
KEGG: sma:SAV1271 putative DNA-binding protein.
 
  
 0.473
Noca_0283
KEGG: rha:RHA1_ro00038 hypothetical protein.
  
    0.439
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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