Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1000PFAM: UspA domain protein; KEGG: mmc:Mmcs_0719 UspA. (293 aa)    
Predicted Functional Partners:
Noca_0999
KEGG: pac:PPA1465 hypothetical protein.
 
  
 0.684
Noca_1997
PFAM: UspA domain protein; KEGG: mmc:Mmcs_1097 UspA.
  
     0.675
Noca_1001
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mfa:Mfla_1382 beta-lactamase-like protein.
 
    0.634
Noca_0951
PFAM: UspA domain protein; KEGG: cjk:jk0100 putative universal stress protein.
  
     0.546
Noca_1002
KEGG: cef:CE2430 hypothetical protein.
 
  
 0.518
Noca_0948
PFAM: UspA domain protein; KEGG: rha:RHA1_ro04893 universal stress protein.
  
     0.443
Noca_3300
methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
  
  
 0.433
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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