STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1005PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein. (293 aa)    
Predicted Functional Partners:
Noca_1997
PFAM: UspA domain protein; KEGG: mmc:Mmcs_1097 UspA.
  
     0.737
Noca_1006
PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein.
  
  
 0.609
Noca_0951
PFAM: UspA domain protein; KEGG: cjk:jk0100 putative universal stress protein.
  
     0.582
Noca_1004
PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_1311 hypothetical protein.
  
  
 0.579
Noca_0284
KEGG: fra:Francci3_4502 putative signal-transduction protein with CBS domains.
 
  
 0.541
Noca_0285
KEGG: sco:SCO0174 putative DNA-binding protein.
 
  
 0.512
Noca_3126
KEGG: sma:SAV6061 hypothetical protein.
  
     0.448
Noca_0283
KEGG: rha:RHA1_ro00038 hypothetical protein.
  
    0.444
Noca_0990
KEGG: nfa:nfa28960 hypothetical protein.
 
  
 0.428
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
   
 0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.