STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1007PFAM: phosphoesterase; KEGG: sma:SAV5971 secreted acid phosphatase. (305 aa)    
Predicted Functional Partners:
Noca_3201
PFAM: phosphoesterase; KEGG: bam:Bamb_5381 phosphoesterase.
 
  
  0.933
Noca_2380
CDP-diacylglycerol inositol 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sma:SAV6826 putative membrane transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
  0.900
Noca_1008
PFAM: regulatory proteins, IclR; KEGG: mmc:Mmcs_1697 regulatory proteins, IclR.
       0.768
Noca_4524
KEGG: bps:BPSS1911 hypothetical protein.
  
     0.505
Noca_2124
PFAM: high-affinity nickel-transporter; KEGG: mpa:MAP2924 NicT; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.406
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.