STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1008PFAM: regulatory proteins, IclR; KEGG: mmc:Mmcs_1697 regulatory proteins, IclR. (133 aa)    
Predicted Functional Partners:
Noca_0681
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR; KEGG: mpa:MAP2738c hypothetical protein.
  
     0.771
Noca_4095
PFAM: regulatory proteins, IclR; KEGG: rxy:Rxyl_0364 transcriptional regulator, IclR family.
  
     0.771
Noca_3768
PFAM: regulatory proteins, IclR; KEGG: sco:SCO7618 transcriptional regulator.
  
     0.769
Noca_1007
PFAM: phosphoesterase; KEGG: sma:SAV5971 secreted acid phosphatase.
       0.768
Noca_4402
PFAM: regulatory proteins, IclR; KEGG: lxx:Lxx22150 transcriptional regulator, IclR family.
  
     0.757
Noca_1292
SMART: regulatory proteins, IclR; KEGG: sma:SAV5141 differentiation regulon (IclR-family transcriptional regulator).
  
     0.668
Noca_2977
PFAM: Allophanate hydrolase subunit 1; KEGG: sma:SAV6938 inhibitor of KinA.
  
    0.542
Noca_3299
PFAM: regulatory proteins, IclR; KEGG: sma:SAV2687 IclR-family transcriptional regulator.
  
     0.433
Noca_1011
TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase.
 
  
 0.427
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
  
 0.416
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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