STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1017KEGG: mmc:Mmcs_1202 hypothetical protein. (307 aa)    
Predicted Functional Partners:
Noca_0898
KEGG: fra:Francci3_0932 hypothetical protein.
  
     0.571
Noca_2675
PFAM: pentapeptide repeat protein.
  
     0.537
Noca_3966
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4106 hypothetical protein.
  
     0.510
Noca_2173
PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro04167 possible transcriptional regulator.
  
     0.457
Noca_1016
Cysteine--tRNA ligase; PFAM: cysteinyl-tRNA synthetase, class Ia; KEGG: tfu:Tfu_1832 cysteine--tRNA ligase.
       0.456
Noca_4606
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4151 acetyltransferase.
  
     0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.