STRINGSTRING
Noca_1027 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1027" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1027Hypothetical protein (791 aa)    
Predicted Functional Partners:
Noca_1543
Type II secretion system protein (300 aa)
   
          0.670
Noca_1542
Integral membrane protein (299 aa)
   
          0.591
Noca_1540
Hypothetical protein (268 aa)
   
          0.556
Noca_0995
Hypothetical protein (201 aa)
   
          0.547
Noca_1720
Transposase IS116/IS110/IS902 family protein (409 aa)
   
          0.536
Noca_1720
Transposase IS116/IS110/IS902 family protein (409 aa)
   
          0.536
Noca_4651
Hypothetical protein (453 aa)
   
          0.479
Noca_2010
NifU domain-containing protein (181 aa)
   
          0.474
Noca_1034
Radical SAM domain-containing protein (375 aa)
   
          0.470
Noca_4652
Transposase, IS111A/IS1328/IS1533 (500 aa)
   
          0.456
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (5%) [HD]