STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1035PFAM: nitroreductase; KEGG: sth:STH638 nitroreductase. (226 aa)    
Predicted Functional Partners:
Noca_1033
PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: tac:Ta0575 probable aspartate carbamoyltransferase, catalytic chain.
       0.552
Noca_1034
PFAM: Radical SAM domain protein; KEGG: rpe:RPE_3191 radical SAM domain protein.
       0.550
Noca_1032
Hypothetical protein.
       0.492
Noca_3494
TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: sco:SCO4927 biotin apo-protein ligase.
 
    0.439
Noca_0121
PFAM: ABC-2 type transporter; KEGG: sco:SCO5382 putative ABC transporter, integral membrane subunit.
  
  
 0.418
Noca_0479
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro00945 ABC transporter, permease component.
  
  
 0.418
Noca_1483
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro04497 ABC transporter, permease component.
  
  
 0.418
Noca_2544
PFAM: ABC-2 type transporter; KEGG: sco:SCO1929 putative integral membrane transport protein.
  
  
 0.418
cobB-2
Hydrogenobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
  
  
 0.418
Noca_3335
PFAM: Abortive infection protein; KEGG: pac:PPA1365 conserved protein YyaK.
  
  
 0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.