STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1100PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase; Belongs to the 'phage' integrase family. (383 aa)    
Predicted Functional Partners:
Noca_1101
PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0807 transcriptional regulator, XRE family.
       0.556
Noca_0602
PFAM: phage integrase family protein; KEGG: eba:p2A229 putative integrase.
  
     0.549
Noca_2178
PFAM: phage integrase family protein; KEGG: pfo:Pfl_1025 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.488
xerC
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.460
xerD
Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.450
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
       0.441
Noca_1099
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: tma:TM0038 6-pyruvoyltetrahydropterin synthase.
       0.438
Noca_3333
Hypothetical protein; KEGG: mmc:Mmcs_4828 phage integrase.
  
     0.433
Noca_4276
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro04370 hypothetical protein.
  
    0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.