STRINGSTRING
Noca_1100 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1100" - Phage integrase family protein in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1100Phage integrase family protein (383 aa)    
Predicted Functional Partners:
Noca_1101
Helix-turn-helix domain-containing protein (316 aa)
              0.649
Noca_1106
Restriction modification system DNA specificity subunit (161 aa)
   
   
  0.569
Noca_1105
Restriction modification system DNA specificity subunit (225 aa)
   
   
  0.569
Noca_2178
Phage integrase family protein (303 aa)
 
 
 
  0.542
xerC
Phage integrase family protein (312 aa)
   
          0.524
xerD
Tyrosine recombinase XerD (318 aa)
 
 
 
  0.518
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (528 aa)
   
   
  0.517
Noca_3006
DNA polymerase I (889 aa)
 
     
  0.499
Noca_1099
Putative 6-pyruvoyl tetrahydropterin synthase (118 aa)
              0.497
queE
Radical SAM domain-containing protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds (246 aa)
              0.488
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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