Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_1108KEGG: vvy:VV1848 hypothetical protein. (68 aa)    
Predicted Functional Partners:
Noca_1106
PFAM: restriction modification system DNA specificity domain; KEGG: hpa:HPAG1_0832 HP0790-like protein.
       0.497
Noca_1107
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.497
Noca_1109
Hypothetical protein.
       0.444
Noca_1104
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: xfa:XF2728 type I restriction-modification system DNA methylase.
       0.436
Noca_1105
PFAM: restriction modification system DNA specificity domain; KEGG: xfa:XF2726 type I restriction-modification system specificity determinant.
       0.436
Noca_1103
PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: nar:Saro_0260 protein of unknown function DUF1524 RloF.
       0.403
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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