STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1127PFAM: type II secretion system protein; KEGG: pca:Pcar_2147 type IV pilus biogenesis protein PilC. (411 aa)    
Predicted Functional Partners:
Noca_1128
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs.
 
 
 0.998
Noca_1126
KEGG: rxy:Rxyl_1165 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
  
 0.968
Noca_1121
Hypothetical protein; KEGG: sat:SYN_00814 tfp pilus assembly protein, major pilin.
 
  
 0.967
Noca_1131
TIGRFAM: type IV pilus assembly protein PilM; KEGG: ade:Adeh_0641 type IV pilus assembly protein PilM.
 
 
 
 0.934
Noca_1136
PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: rxy:Rxyl_1154 peptidase A24A-like protein.
 
  
 0.911
Noca_1122
Hypothetical protein; KEGG: eba:ebA1616 general secretion protein H.
 
  
 0.906
Noca_1123
Hypothetical protein; KEGG: bpm:BURPS1710b_2168 Hep_Hag family protein/haemagluttinin motif family protein/YadA-like domain protein.
  
  
 0.892
Noca_1887
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein.
  
  
 0.861
Noca_1130
KEGG: dra:DR0442 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
  
 0.824
Noca_1124
Hypothetical protein.
  
  
 0.701
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.