STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1202KEGG: pac:PPA0637 hypothetical protein. (100 aa)    
Predicted Functional Partners:
Noca_1201
PFAM: conserved hypothetical protein 730; KEGG: sco:SCO5140 hypothetical protein; Belongs to the LOG family.
       0.838
Noca_1200
TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tfu:Tfu_0495 succinyl-diaminopimelate desuccinylase.
       0.833
Noca_1203
Hypothetical protein.
       0.737
Noca_1204
PFAM: peptidase M14, carboxypeptidase A; KEGG: cya:CYA_2877 zinc carboxypeptidase.
       0.716
Noca_1427
KEGG: pac:PPA1688 hypothetical protein.
  
     0.633
Noca_1468
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO4430 secreted protein.
  
     0.607
Noca_0795
KEGG: sco:SCO3177 hypothetical protein.
  
     0.560
Noca_1199
PFAM: luciferase family protein; KEGG: mmc:Mmcs_4324 luciferase-like protein.
       0.557
Noca_0449
KEGG: sco:SCO3402 secreted protein.
  
     0.554
Noca_4330
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sma:SAV6085 hypothetical protein.
  
     0.549
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.