STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1204PFAM: peptidase M14, carboxypeptidase A; KEGG: cya:CYA_2877 zinc carboxypeptidase. (262 aa)    
Predicted Functional Partners:
Noca_1203
Hypothetical protein.
       0.752
Noca_1200
TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tfu:Tfu_0495 succinyl-diaminopimelate desuccinylase.
     
 0.736
Noca_1201
PFAM: conserved hypothetical protein 730; KEGG: sco:SCO5140 hypothetical protein; Belongs to the LOG family.
       0.716
Noca_1202
KEGG: pac:PPA0637 hypothetical protein.
       0.716
Noca_2305
KEGG: mmc:Mmcs_3312 hypothetical protein.
  
 
 0.663
Noca_1199
PFAM: luciferase family protein; KEGG: mmc:Mmcs_4324 luciferase-like protein.
       0.519
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.