STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1232PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro06221 possible dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (305 aa)    
Predicted Functional Partners:
Noca_1667
Male sterility C-terminal domain; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: sru:SRU_2653 3-beta hydroxysteroid dehydrogenase/isomerase family.
   
 0.947
Noca_3706
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro08645 hypothetical protein; Belongs to the long-chain O-acyltransferase family.
 
  
 0.726
Noca_0689
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR.
 
 
 0.618
Noca_3380
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5285 short-chain dehydrogenase/reductase SDR.
 
 
 0.592
Noca_3850
KEGG: abo:ABO_1590 hypothetical protein.
 
     0.592
Noca_1730
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_1257 transcriptional regulator, TetR family.
  
     0.570
Noca_1231
PFAM: regulatory protein, TetR; KEGG: ade:Adeh_3099 transcriptional regulator, TetR family.
       0.566
Noca_2792
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro06855 hypothetical protein; Belongs to the long-chain O-acyltransferase family.
 
  
 0.560
Noca_1669
Diacylglycerol O-acyltransferase; PFAM: condensation domain protein; protein of unknown function UPF0089; KEGG: sru:SRU_2506 uncharacterized protein family (UPF0089).
 
  
 0.537
Noca_2766
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6197 putative oxidoreductase.
 
 
 0.522
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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