Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1245Hypothetical protein. (159 aa)    
Predicted Functional Partners:
Noca_1246
KEGG: ath:At4g01985 expressed protein.
       0.773
Noca_1244
Hypothetical protein.
       0.549
Noca_1247
Conserved carboxylase region; PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: sus:Acid_6961 conserved carboxylase region.
       0.501
Noca_1248
PFAM: carboxyl transferase; KEGG: cdi:DIP0740 methylmalonyl-CoA decarboxylase, alpha-subunit.
       0.492
Noca_1249
KEGG: cdi:DIP0741 hypothetical protein.
       0.480
Noca_1250
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cdi:DIP0742 putative decarboxylase.
       0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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