Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_1252PFAM: type II secretion system protein E; KEGG: fal:FRAAL1319 putative type II/type IV pathway secretion protein. (435 aa)    
Predicted Functional Partners:
Noca_1254
PFAM: type II secretion system protein; KEGG: fal:FRAAL1321 hypothetical protein.
 
  
 0.968
Noca_1253
PFAM: type II secretion system protein; KEGG: fal:FRAAL1320 hypothetical protein.
 
  
 0.954
Noca_3118
PFAM: type II secretion system protein; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein.
 
  
 0.874
Noca_3117
PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein.
 
  
 0.866
Noca_1256
PFAM: TadE family protein; KEGG: fal:FRAAL1323 hypothetical protein.
 
  
 0.829
Noca_3115
KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
 
  
 0.791
Noca_1255
KEGG: fra:Francci3_0782 hypothetical protein.
 
     0.787
Noca_1257
KEGG: fra:Francci3_0784 hypothetical protein.
 
     0.738
Noca_3114
PFAM: SAF domain; KEGG: sus:Acid_4161 SAF domain.
 
  
 0.674
Noca_1258
Hypothetical protein.
       0.650
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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