STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1271PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: dme:Dmel_CG4927 CG4927. (280 aa)    
Predicted Functional Partners:
Noca_1270
PFAM: peptidase M23B; KEGG: ava:Ava_0183 peptidase M23B.
     
 0.590
Noca_3708
PFAM: peptidase M10A and M12B, matrixin and adamalysin.
  
     0.556
Noca_1563
PFAM: glycosyl transferase, group 1; KEGG: mac:MA0798 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein.
 
   
 0.542
Noca_2065
PFAM: glycosyl transferase, group 1; KEGG: rxy:Rxyl_2620 phosphatidyl-myo-inositol alpha-mannosyltransferase.
  
   
 0.527
Noca_4356
Hypothetical protein.
   
  
 0.513
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.512
Noca_1273
PFAM: amidohydrolase 2; KEGG: nfa:nfa25480 putative amidohydrolase.
       0.512
Noca_3993
Hypothetical protein; KEGG: sco:SCO4598 two-component system sensor kinase.
  
     0.478
Noca_1152
KEGG: afm:Afu4g03440 hypothetical protein.
  
     0.444
Noca_1561
PFAM: phosphoesterase, PA-phosphatase related; KEGG: vpa:VP2408 hypothetical protein.
  
     0.427
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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