Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_1291PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV5140 protein involving differentiation. (598 aa)    
Predicted Functional Partners:
Noca_1290
KEGG: pac:PPA1685 hypothetical protein.
 
     0.866
Noca_1292
SMART: regulatory proteins, IclR; KEGG: sma:SAV5141 differentiation regulon (IclR-family transcriptional regulator).
       0.774
Noca_1900
KEGG: mmc:Mmcs_2324 hypothetical protein.
 
     0.765
Noca_2959
KEGG: tfu:Tfu_2135 hypothetical protein.
 
     0.692
Noca_1984
KEGG: sco:SCO2391 hypothetical protein.
  
     0.658
Noca_1289
PFAM: protein of unknown function DUF179; KEGG: sma:SAV5129 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
       0.639
Noca_2394
PFAM: protein of unknown function DUF349; KEGG: pac:PPA1167 putative ATPase involved in DNA repair.
 
  
 0.639
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
  0.601
Noca_0374
PFAM: methyltransferase small; Methyltransferase type 12; KEGG: sma:SAV4618 rRNA or tRNA methyltransferase; Belongs to the methyltransferase superfamily.
 
 
   0.583
Noca_3824
SMART: helicase c2; DEAD-like helicases-like; KEGG: sma:SAV2464 putative ATP-dependent helicase.
   
 0.572
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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