STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1292SMART: regulatory proteins, IclR; KEGG: sma:SAV5141 differentiation regulon (IclR-family transcriptional regulator). (226 aa)    
Predicted Functional Partners:
Noca_1291
PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV5140 protein involving differentiation.
       0.775
Noca_1290
KEGG: pac:PPA1685 hypothetical protein.
       0.773
Noca_4095
PFAM: regulatory proteins, IclR; KEGG: rxy:Rxyl_0364 transcriptional regulator, IclR family.
  
     0.753
Noca_0681
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR; KEGG: mpa:MAP2738c hypothetical protein.
  
     0.751
Noca_1652
PFAM: regulatory proteins, IclR; KEGG: rha:RHA1_ro08086 transcriptional regulator, IclR family.
  
     0.743
Noca_0687
PFAM: regulatory proteins, IclR; KEGG: sco:SCO6669 transcriptional regulator.
  
     0.739
Noca_3768
PFAM: regulatory proteins, IclR; KEGG: sco:SCO7618 transcriptional regulator.
  
     0.700
Noca_1008
PFAM: regulatory proteins, IclR; KEGG: mmc:Mmcs_1697 regulatory proteins, IclR.
  
     0.668
Noca_4402
PFAM: regulatory proteins, IclR; KEGG: lxx:Lxx22150 transcriptional regulator, IclR family.
  
     0.615
Noca_1289
PFAM: protein of unknown function DUF179; KEGG: sma:SAV5129 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
  
    0.587
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.