STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1295KEGG: rha:RHA1_ro03041 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (397 aa)    
Predicted Functional Partners:
Noca_0657
PFAM: homogentisate 1,2-dioxygenase; Cupin 2, conserved barrel domain protein; KEGG: rha:RHA1_ro02311 homogentisate 1,2-dioxygenase.
 
 0.998
Noca_0655
Fumarylacetoacetate hydrolase; KEGG: rha:RHA1_ro02309 probable fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase.
 
  
 0.936
pat
Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
    
 0.922
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: tfu:Tfu_1151 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.909
Noca_0647
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: rxy:Rxyl_1818 D-amino-acid dehydrogenase.
   
 
 0.908
Noca_0666
PFAM: Amidase; KEGG: mmc:Mmcs_1995 amidase.
  
 
  0.816
Noca_1228
PFAM: Amidase; KEGG: mpa:MAP2509c putative amidase; Belongs to the amidase family.
  
 
  0.816
Noca_1493
PFAM: Amidase; KEGG: rha:RHA1_ro04799 probable amidase; Belongs to the amidase family.
  
 
  0.816
Noca_3358
PFAM: Amidase; KEGG: tfu:Tfu_2207 amidase; Belongs to the amidase family.
  
 
  0.816
Noca_1294
PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO2928 AsnC-family transcriptional regulator.
 
     0.724
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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