STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1337PFAM: regulatory protein, LuxR; KEGG: sco:SCO0421 two-component response regulator. (188 aa)    
Predicted Functional Partners:
Noca_2942
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold domain protein; KEGG: dge:Dgeo_0556 multi-sensor signal transduction histidine kinase.
 
 
 0.841
Noca_2634
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rha:RHA1_ro06091 sensor kinase, two-component system.
 
 
 0.840
Noca_3119
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rxy:Rxyl_2612 GAF sensor signal transduction histidine kinase.
 
 
 0.836
Noca_1019
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV4680 two-component system sensor kinase.
 
 
 0.820
Noca_1670
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mag:amb3735 signal transduction histidine kinase.
  
 
 0.798
Noca_3642
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO1071 two component system sensor kinase.
 
 
 0.797
Noca_1335
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: mpa:MAP1672 hypothetical protein.
  
  
 0.784
Noca_1336
TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rha:RHA1_ro02920 tRNA processing ribonuclease BN.
       0.773
Noca_3643
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO6667 two-component regulator.
  
     0.764
Noca_3120
PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro00150 response regulator, two-component system.
  
     0.760
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.