STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1353PFAM: DSBA oxidoreductase; KEGG: fra:Francci3_0913 DsbA oxidoreductase. (244 aa)    
Predicted Functional Partners:
Noca_1352
PFAM: DoxX family protein; KEGG: fal:FRAAL1525 hypothetical protein; putative membrane protein; putative DoxD-like domain.
 
     0.840
orn
Exonuclease, RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.
  
  
 0.579
Noca_0411
PFAM: Vitamin K epoxide reductase; KEGG: blo:BL0088 narrowly conserved hypothetical transmembrane protein.
  
  
 0.532
Noca_1354
KEGG: mpa:MAP1053 hypothetical protein.
 
     0.491
Noca_3822
KEGG: mxa:MXAN_6640 hypothetical protein.
 
     0.465
Noca_3823
KEGG: mxa:MXAN_6640 hypothetical protein.
 
     0.459
Noca_3940
PFAM: RDD domain containing protein; KEGG: lxx:Lxx12090 hypothetical protein.
 
    0.457
Noca_0501
PFAM: Redoxin domain protein; KEGG: pac:PPA0325 hypothetical protein.
  
 
 0.447
Noca_2202
PFAM: Redoxin domain protein; KEGG: tfu:Tfu_2704 hypothetical protein.
  
 
 0.447
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
  
    0.421
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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