STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1365KEGG: tfu:Tfu_1996 putative integral membrane protein. (377 aa)    
Predicted Functional Partners:
Noca_1366
KEGG: pac:PPA1639 putative ABC transporter.
       0.779
Noca_1364
Xaa-Pro aminopeptidase; PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: tfu:Tfu_1744 Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
 
     0.623
Noca_1367
KEGG: pac:PPA1638 putative ABC transporter.
       0.590
Noca_4437
KEGG: fal:FRAAL4052 hypothetical membrane protein.
  
    0.589
Noca_1368
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: lxx:Lxx12825 single-strand DNA-binding protein.
       0.551
Noca_3022
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sco:SCO2026 putative glutamate synthase large subunit.
       0.544
Noca_1369
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pac:PPA1636 ABC transporter ATP-binding protein.
       0.473
Noca_2969
PFAM: glutamate--cysteine ligase, GCS2; KEGG: sco:SCO7509 hypothetical protein.
 
     0.469
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.420
Noca_1362
KEGG: rha:RHA1_ro02307 hypothetical protein.
 
     0.417
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.