STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1372PFAM: regulatory protein, TetR; KEGG: ade:Adeh_2880 putative transcriptional regulator, TetR family. (193 aa)    
Predicted Functional Partners:
Noca_1371
KEGG: sma:SAV3512 putative thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.528
Noca_0779
PFAM: iron dependent repressor; KEGG: sma:SAV3855 putative iron dependent regulatory protein.
   
    0.471
Noca_2302
PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: nfa:nfa16890 putative epimerase.
  
    0.463
Noca_4346
PFAM: Helix-turn-helix, type 11 domain protein; KEGG: sco:SCO1353 transcriptional regulator.
  
    0.426
Noca_2558
PFAM: transcriptional regulator TrmB; KEGG: sco:SCO3632 hypothetical protein.
  
    0.410
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.