STRINGSTRING
Noca_1372 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1372" - Regulatory protein TetR in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1372Regulatory protein TetR (193 aa)    
Predicted Functional Partners:
Noca_3478
Cyclase/dehydrase (160 aa)
   
          0.664
Noca_2783
Hypothetical protein (170 aa)
   
          0.625
Noca_1524
NUDIX hydrolase (188 aa)
   
          0.609
Noca_1371
acetyl-CoA acetyltransferase (404 aa)
              0.592
Noca_3549
Integral membrane protein (277 aa)
   
          0.493
Noca_1152
Hypothetical protein (310 aa)
   
          0.493
Noca_3499
HNH endonuclease (117 aa)
   
          0.489
Noca_1196
Hypothetical protein (174 aa)
   
          0.469
Noca_3735
Hypothetical protein (209 aa)
   
          0.423
Noca_4183
HNH endonuclease (434 aa)
   
          0.407
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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