Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1376PFAM: globin; KEGG: sco:SCO2671 putative globin. (124 aa)    
Predicted Functional Partners:
Noca_0775
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: tfu:Tfu_0833 alpha amylase, catalytic subdomain.
      0.623
Noca_1377
PFAM: OsmC family protein; KEGG: sma:SAV1862 putative ATP/GTP-binding protein.
       0.580
Noca_0609
Hypothetical protein.
  
  
 0.428
Noca_1383
KEGG: mmc:Mmcs_3603 DsbA oxidoreductase.
  
  
 0.428
Noca_2082
KEGG: nfa:nfa13250 hypothetical protein.
  
  
 0.428
Noca_2099
Hypothetical protein.
  
  
 0.428
Noca_3389
PFAM: DSBA oxidoreductase; KEGG: sco:SCO1869 hypothetical protein.
  
  
 0.428
Noca_4304
KEGG: bba:Bd1520 hypothetical protein.
  
  
 0.428
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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