STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1395TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: pac:PPA1699 cell envelope-related transcriptional attenuator. (404 aa)    
Predicted Functional Partners:
Noca_2549
Transcriptional regulator, ArsR family; PFAM: HMG-I and HMG-Y, DNA-binding domain protein; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6324 DNA-binding protein.
  
    0.795
Noca_1394
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02707 probable enoyl-CoA hydratase.
       0.783
Noca_1396
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro00024 hypothetical protein; Belongs to the long-chain O-acyltransferase family.
  
    0.775
Noca_1801
PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_2393 regulatory protein, MarR.
  
    0.773
Noca_4431
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sco:SCO7307 chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family.
   
  
 0.746
Noca_1609
KEGG: rha:RHA1_ro08010 hypothetical protein.
   
    0.741
cobB
PFAM: Silent information regulator protein Sir2; KEGG: sal:Sala_2748 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
  
    0.715
Noca_0781
PFAM: Silent information regulator protein Sir2; KEGG: nfa:nfa43380 putative Sir2 family regulator.
  
    0.715
Noca_2660
PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO1425 putative AsnC-family transcriptional regulatory protein.
   
    0.704
Noca_3302
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sco:SCO3042 transcriptional regulator.
 
   
0.624
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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