STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1399PFAM: glycosyl transferase, family 2; KEGG: cdi:DIP0168 putative glycosyl transferase. (315 aa)    
Predicted Functional Partners:
Noca_1400
PFAM: glycosyl transferase, family 2; KEGG: mth:MTH348 rhamnosyl transferase.
 
  
 
0.983
Noca_1401
PFAM: UDP-galactopyranose mutase; KEGG: rha:RHA1_ro04053 UDP-galactopyranose mutase.
 
  
 0.962
Noca_1402
KEGG: rha:RHA1_ro04054 possible glycosyltransferase.
 
   
 0.939
Noca_1403
PFAM: ABC-2 type transporter; KEGG: lxx:Lxx05020 lipopolysaccharide exporter.
 
  
 0.900
Noca_1404
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx05010 lipopolysaccharide exporter.
 
  
 0.847
Noca_3792
Hypothetical protein.
  
  
 0.674
Noca_1398
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tfu:Tfu_0017 cell envelope-related transcriptional attenuator.
       0.564
Noca_4219
PFAM: sugar transferase; KEGG: bth:BT0611 glycosyltransferase.
 
  
 0.511
Noca_0152
Hypothetical protein.
 
     0.496
Noca_1451
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pat:Patl_3212 coagulation factor 5/8 type-like.
 
  
 0.461
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.