STRINGSTRING
Noca_1422 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1422" - GntR family transcriptional regulator in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1422GntR family transcriptional regulator (221 aa)    
Predicted Functional Partners:
Noca_4456
GntR family transcriptional regulator (213 aa)
   
          0.778
Noca_4063
GntR family transcriptional regulator (242 aa)
   
          0.766
Noca_2132
GntR family transcriptional regulator (246 aa)
   
          0.761
Noca_2588
GntR family transcriptional regulator (248 aa)
   
          0.618
Noca_0841
GntR family transcriptional regulator (246 aa)
   
          0.607
Noca_1421
Aldehyde dehydrogenase (490 aa)
              0.549
Noca_0850
GntR family transcriptional regulator (268 aa)
   
          0.516
Noca_1420
Extracellular solute-binding protein (424 aa)
              0.421
Noca_0402
GntR family transcriptional regulator (239 aa)
   
          0.410
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (10%) [HD]