Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_1564PFAM: LmbE family protein; KEGG: mpa:MAP2993 hypothetical protein. (249 aa)    
Predicted Functional Partners:
Noca_1563
PFAM: glycosyl transferase, group 1; KEGG: mac:MA0798 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein.
 
  
 0.892
Noca_1562
PFAM: glycosyl transferase, family 2; KEGG: fra:Francci3_2271 dolichyl-phosphate beta-D-mannosyltransferase.
     
 0.784
mshD
GCN5-related N-acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
 
   
 0.671
Noca_1561
PFAM: phosphoesterase, PA-phosphatase related; KEGG: vpa:VP2408 hypothetical protein.
 
     0.652
mshA
Glycosyl transferase, group 1; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.
 
  
 0.550
Noca_1383
KEGG: mmc:Mmcs_3603 DsbA oxidoreductase.
 
    0.514
Noca_2065
PFAM: glycosyl transferase, group 1; KEGG: rxy:Rxyl_2620 phosphatidyl-myo-inositol alpha-mannosyltransferase.
 
  
 0.513
Noca_1555
KEGG: sma:SAV1313 hypothetical protein.
 
   
 0.444
Noca_1558
Hypothetical protein; KEGG: bbr:BB1276 putative integral membrane protein.
       0.441
Noca_1559
PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: fra:Francci3_2401 two component transcriptional regulator, winged helix family.
       0.441
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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